Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs142013729 chr12:10717791 G/T 5.74E-5 489 30.77 32.77 19.93 KM Plot
PRAD rs142153127 chr5:154189928 A/G 9.6E-9 489 30.3 33.27 20.47 KM Plot
PRAD rs1421814 chr5:154282243 G/C 0 493 30.33 32.4 4.87 KM Plot
PRAD rs1421815 chr5:154282407 G/T 0 494 30.73 31.88 4.87 KM Plot
PRAD rs1421819 chr5:154336832 C/T 6.14E-7 489 30.3 34.52 20.47 KM Plot
PRAD rs142393858 chr3:133456380 G/A 5.67E-5 492 30.9 30.93 35.33 KM Plot
PRAD rs142407641 chr8:54194974 CACAG/C 3.99E-6 485 31.27 25.98 49.93 KM Plot
PRAD rs142544347 chr5:154209977 GC/G 0 492 29.97 37.43 4.87 KM Plot
PRAD rs142697637 chr5:154110627 C/T 0 476 29.63 33.27 4.87 KM Plot
PRAD rs142802278 chr9:72851425 A/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs143057635 chr5:154220591 CAG/C 0 494 29.8 36.53 4.87 KM Plot
PRAD rs143143636 chr17:6713953 C/T 0 491 31.27 24.5 4.87 KM Plot
PRAD rs143249192 chr9:72859841 C/G 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs143292727 chr9:72831340 GAA/G 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs143382665 chr20:429510 C/T 7.32E-8 493 31.27 24.13 21.2 KM Plot